Data & code
NCI Genomic Data Commons
Raw sequencing data, BAM files, and normalized m⁶A profiles are intended for release through the GDC.
The Cancer Proteome Atlas (TCPA)
RPPA measurements for the 15 core m⁶A regulators are intended for access through TCPA.
Project repository
Processed m⁶A matrices, predicted m⁶A values, RPPA measurements, analysis scripts, parameter settings, and software versions.
Example model inputs
The six category input files used by the m⁶A prediction tool — download a template to see the required columns and formatting.
- CSVcat1_sequence_features.csvCat 1 · sequence features (cis)
- CSVcat2a_peak_mrna.csvCat 2a · peak m⁶A abundance (cis)
- CSVcat2b_gene_mRNA.csvCat 2b · host-gene mRNA (cis)
- CSVcat3a_rppa_regulator.csvCat 3a · regulator RPPA (trans)
- CSVcat3b_mrna_regulator.csvCat 3b · regulator mRNA (trans)
- CSVcat4_tissue_context.csvCat 4 · tissue context (trans)
Note: bulk data downloads (processed matrices, predicted values) will be linked here once released — for now they live in the project repository above.